Shuangxi Ji

About

Research interests include finding cancer biomarkers by studying cancer genomics and imaging data.

Employment

• The University of Texas MD Anderson Cancer Center Children's Cancer Hospital Postdoctoral fellow
  2019 - Present
• SocialCredits Team Leader
  2018 - 2019

Education

• University of Birmingham PhD
  2013 - 2019
• Peking University Master
  2010 - 2013
• Changsha University of Science and Technology Bachelor
  2006 - 2010

Projects & Funding

Projects & funding information is unavailable.

Publications (14)

• Tumor cell specific total mRNA expression informed neural networks predicts cancer progression
  Ankita Paul, Jessica C. Lal, Shuangxi Ji

  +10 more

  • Carissa Fong
  • Kevin Chen
  • Yu Ding
  • Ruonan Li
  • Yaoyi Dai
  • +5 more
  2026 DOI: 10.64898/2026.05.01.722212
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• Subclonal mutation load predicts survival and response to immunotherapy in cancers with low to moderate tumor mutation burden
  2024 DOI: 10.1101/2024.07.03.601939
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• Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples
  Genome Research 2024 DOI: 10.1101/gr.278456.123
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• Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples
  2023 DOI: 10.1101/2023.07.04.547569
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• Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression.
  Shaolong Cao, Jennifer Rui Wang, Shuangxi Ji +37 more
  Nature biotechnology 2022 DOI: 10.1038/s41587-022-01342-x
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• MuSE: A Novel Approach to Mutation Calling with Sample-Specific Error Modeling.
  Methods in molecular biology (Clifton, N.J.) 2022 DOI: 10.1007/978-1-0716-2293-3_2
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• Novel Anaplastic Thyroid Cancer PDXs and Cell Lines: Expanding Preclinical Models of Genetic Diversity
  The Journal of Clinical Endocrinology & Metabolism 2021 DOI: 10.1210/clinem/dgab453
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• CliP: subclonal architecture reconstruction of cancer cells in DNA sequencing data using a penalized likelihood model
  [] 2021 DOI: 10.1101/2021.03.31.437383
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• Tumor cell total mRNA expression shapes the molecular and clinical phenotype of cancer
  2020 DOI: 10.1101/2020.09.30.306795
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• Structure of SPH (self-incompatibility protein homologue) proteins: a widespread family of small, highly stable, secreted proteins
  Biochemical Journal 2019 DOI: 10.1042/bcj20180828
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• DeepCDpred: Inter-residue distance and contact prediction for improved prediction of protein structure
  PLOS ONE 2019 DOI: 10.1371/journal.pone.0205214
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• Turbo fast three-dimensional carotid artery black-blood MRI by combining three-dimensional MERGE sequence with compressed sensing
  Magnetic Resonance in Medicine 2013 DOI: 10.1002/mrm.24579
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• Kissing and nanotunneling mediate intermitochondrial communication in the heart.
  Proceedings of the National Academy of Sciences of the United States of America 2013 DOI: 10.1073/pnas.1300741110
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• Automatic segmentation of white matter hyperintensities by an extended FitzHugh & nagumo reaction diffusion model
  Journal of Magnetic Resonance Imaging 2013 DOI: 10.1002/jmri.23836
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