Vipin Sachdeva

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Publications (23)

• Molecular dynamics range-limited force evaluation optimized for FPGAs
  Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors 2019 DOI: 10.1109/ASAP.2019.00016
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• Fully integrated FPGA molecular dynamics simulations
  International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2019 DOI: 10.1145/3295500.3356179
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• K-mer clustering algorithm using a MapReduce framework: Application to the parallelization of the Inchworm module of Trinity
  BMC Bioinformatics 2017 DOI: 10.1186/s12859-017-1881-8
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• OpenCL for HPC with FPGAs: Case study in molecular electrostatics
  2017 IEEE High Performance Extreme Computing Conference, HPEC 2017 2017 DOI: 10.1109/HPEC.2017.8091078
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• OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution
  Biophysical Journal 2017 DOI: 10.1016/j.bpj.2017.04.020
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• A memory and time scalable parallelization of the reptile error-correction code
  Proceedings - 2016 IEEE 30th International Parallel and Distributed Processing Symposium, IPDPS 2016 2016 DOI: 10.1109/IPDPSW.2016.59
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• Exploring HPC-based scientific software as a service using CometCloud
  CollaborateCom 2014 - Proceedings of the 10th IEEE International Conference on Collaborative Computing: Networking, Applications and Worksharing 2015 DOI: 10.4108/icst.collaboratecom.2014.257833
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• K-mer clustering algorithm using a MapReduce approach
  Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014 2014 DOI: 10.1109/BIBM.2014.6999390
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• Parallelization of the trinity pipeline for de Novo transcriptome assembly
  Proceedings of the International Parallel and Distributed Processing Symposium, IPDPS 2014 DOI: 10.1109/IPDPSW.2014.67
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• Mesh interface resolution and ghost exchange in a parallel mesh representation
  Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2012 2012 DOI: 10.1109/IPDPSW.2012.208
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