Debasish Mukherjee

Employment

• Exzellenzcluster CECAD in der Universität zu Köln Bioinformatician
  2023 - Present
• Institute of Molecular Biology Post Doctoral Researcher
  2019 - 2023

Education

• Saha Institute of Nuclear Physics PhD
  2012 - 2019
• Institute of Genomics and Integrative Biology CSIR Project Fellow
  2011 - 2012
• University of Calcutta M.Sc.
  2009 - 2011
• Presidency University B.Sc.
  2006 - 2009

Projects & Funding

Projects & funding information is unavailable.

Publications (11)

• 5-Formylcytosine is an activating epigenetic mark for RNA Pol III during zygotic reprogramming
  Cell 2024 DOI: 10.1016/j.cell.2024.08.011
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• Combining Complementarity and Binding Energetics in the Assessment of Protein Interactions: EnCPdock—A Practical Manual
  Gargi Biswas, Debasish Mukherjee, Sankar Basu
  Journal of Computational Biology 2024 DOI: 10.1089/cmb.2024.0554
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• EnCPdock: a web-interface for direct conjoint comparative analyses of complementarity and binding energetics in inter-protein associations.
  Gargi Biswas, Debasish Mukherjee, Nalok Dutta

  +2 more

  • Prithwi Ghosh
  • Sankar Basu
  Journal of molecular modeling 2023 DOI: 10.1007/s00894-023-05626-0
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• RNABPDB: Molecular Modeling of RNA Structure—From Base Pair Analysis in Crystals to Structure Prediction
  Debasish Mukherjee, Satyabrata Maiti, Prasanta Kumar Gouda +3 more
  Interdisciplinary Sciences: Computational Life Sciences 2022 DOI: 10.1007/s12539-022-00528-w
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• Stacking geometry between two sheared Watson-Crick basepairs: Computational chemistry and bioinformatics based prediction
  Satyabrata Maiti, Debasish Mukherjee, Parthajit Roy +2 more
  Biochimica et Biophysica Acta (BBA) - General Subjects 2020 DOI: 10.1016/j.bbagen.2020.129600
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• Intrinsic structural variability in GNRA-like tetraloops: insight from molecular dynamics simulation.
  Journal of molecular modeling 2017
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• Salt-bridge networks within globular and disordered proteins: characterizing trends for designable interactions
  Sankar Basu, Debasish Mukharjee
  Journal of Molecular Modeling 2017 DOI: 10.1007/s00894-017-3376-y
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• A-to-I editing in human miRNAs is enriched in seed sequence, influenced by sequence contexts and significantly hypoedited in glioblastoma multiforme
  Deepanjan Paul, Ashis Narayan Sinha, Arjun Ray +9 more
  Scientific Reports 2017 DOI: 10.1038/s41598-017-02397-6
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• RNAHelix: computational modeling of nucleic acid structures with Watson-Crick and non-canonical base pairs.
  Dhananjay Bhattacharyya, Sukanya Halder, Sankar Basu +3 more
  2017 DOI: 10.1007/s10822-016-0007-0
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• Comparative analysis of 16S rRNA signature sequences of the genus Idiomarina and Idiomarina woesei sp. nov., a novel marine bacterium isolated from the Andaman Sea.
  Abhijit Poddar, Rinchen T. Lepcha, Debasish Mukherjee

  +2 more

  • Dhananjay Bhattacharyya
  • Subrata K. Das
  2014 DOI: 10.1016/j.resmic.2014.07.008
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• Analysis of stacking overlap in nucleic acid structures: algorithm and application.
  2014
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