Neeraj Sinha

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Publications (11)

• Multiplex Spatial Omics Reveals Changes in Immune-Epithelial Crosstalk During Inflammation and Dysplasia Development in Chronic IBD Patients
  DataverseNL 2024 DOI: 10.34894/lxhzqf
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• MATISSE: An analysis protocol for combining imaging mass cytometry with fluorescence microscopy to generate single-cell data.
  STAR protocols 2021 DOI: 10.1016/j.xpro.2021.101034
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• Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism.
  BMC bioinformatics 2021 DOI: 10.1186/s12859-021-04488-8
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• MATISSE: a method for improved single cell segmentation in imaging mass cytometry.
  BMC biology 2021 DOI: 10.1186/s12915-021-01043-y
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• A Constraint-Based Model Analysis of Enterocyte Mitochondrial Adaptation to Dietary Interventions of Lipid Type and Lipid Load.
  Frontiers in physiology 2018 DOI: 10.3389/fphys.2018.00749
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• Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition.
  Scientific reports 2017 DOI: 10.1038/s41598-017-07350-1
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• A Comprehensive Inter-Tissue Crosstalk Analysis Underlying Progression and Control of Obesity and Diabetes.
  Scientific reports 2015 DOI: 10.1038/srep12340
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• Pathogenicity of Mycobacterium tuberculosis is expressed by regulating metabolic thresholds of the host macrophage.
  PLoS pathogens 2014 DOI: 10.1371/journal.ppat.1004265
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• The Gene Expression Barcode 3.0: improved data processing and mining tools.
  Nucleic acids research 2014 DOI: 10.1093/nar/gkt1204
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• Molecular signatures for obesity and associated disorders identified through partial least square regression models.
  BMC systems biology 2014 DOI: 10.1186/s12918-014-0104-4
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