Andrew Lonsdale

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Publications (20)

• Analysis of Tandem Repeats in Short-Read Sequencing Data: From Genotyping Known Pathogenic Repeats to Discovering Novel Expansions
  Current Protocols 2024 DOI: 10.1002/cpz1.70010
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• LSPpred Suite: Tools for Leaderless Secretory Protein Prediction in Plants
  Plants 2023 DOI: 10.3390/plants12071428
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• TALLSorts: a T-cell acute lymphoblastic leukaemia subtype classifier using RNA-seq expression data
  Biorxiv 2023 DOI: 10.1101/2023.04.05.535648
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• TALLSorts: a T-cell acute lymphoblastic leukemia subtype classifier using RNA-seq expression data
  Allen Gu, Breon Schmidt, Andrew Lonsdale +6 more
  Blood Advances 2023 DOI: 10.1182/bloodadvances.2023010385
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• Toblerone: detecting exon deletion events in cancer using RNA-seq
  Andrew Lonsdale, Andreas Halman, Lauren M. Brown +3 more
  F1000research 2023 DOI: 10.12688/f1000research.129490.1
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• ALLSorts: an RNA-Seq subtype classifier for B-cell acute lymphoblastic leukemia
  Breon Schmidt, Lauren M. Brown, Georgina L. Ryland +8 more
  Blood Advances 2022 DOI: 10.1182/bloodadvances.2021005894
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• A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!
  CourseSource 2021 DOI: 10.24918/cs.2021.17
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• Effects of Excess Manganese on the Xylem Sap Protein Profile of Tomato (Solanum lycopersicum) as Revealed by Shotgun Proteomic Analysis
  International Journal of Molecular Sciences 2020 DOI: 10.3390/ijms21228863
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• The application of RNA sequencing for the diagnosis and genomic classification of pediatric acute lymphoblastic leukemia
  Lauren M. Brown, Andrew Lonsdale, Andrea Zhu +17 more
  Blood Advances 2020 DOI: 10.1182/bloodadvances.2019001008
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• Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software
  GigaScience 2019 DOI: 10.1093/gigascience/giz109
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• Direct reprogramming to human nephron progenitor-like cells using inducible piggyBac transposon expression of SNAI2-EYA1-SIX1
  Kidney International 2019 DOI: 10.1016/j.kint.2018.11.041
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• 3D organoid-derived human glomeruli for personalised podocyte disease modelling and drug screening
  Nature Communications 2018 DOI: 10.1038/s41467-018-07594-z
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• STRetch: detecting and discovering pathogenic short tandem repeat expansions
  Genome Biology 2018 DOI: 10.1186/s13059-018-1505-2
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• Functional Characterization of a Glycosyltransferase from the Moss Physcomitrella patens Involved in the Biosynthesis of a Novel Cell Wall Arabinoglucan
  The Plant Cell 2018 DOI: 10.1105/tpc.18.00082
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• Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes
  Plant Physiology 2017 DOI: 10.1104/pp.17.00295
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• Pipeline to Identify Hydroxyproline-Rich Glycoproteins
  Plant Physiology 2017 DOI: 10.1104/pp.17.00294
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• Better Than Nothing? Limitations of the Prediction Tool SecretomeP in the Search for Leaderless Secretory Proteins (LSPs) in Plants
  Frontiers in Plant Science 2016 DOI: 10.3389/fpls.2016.01451
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• Ten Simple Rules for a Bioinformatics Journal Club.
  2016 DOI: 10.1371/journal.pcbi.1004526
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• Asparagus Spears as a Model to Study Heteroxylan Biosynthesis during Secondary Wall Development.
  2015 DOI: 10.1371/journal.pone.0123878
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• Ten simple rules for writing a PLOS ten simple rules article.
  2014 DOI: 10.1371/journal.pcbi.1003858
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