Yuxuan Du

Employment

• The University of Texas at San Antonio Assistant Professor
  2024 - Present
• University of Southern California Graduate Research Assistant
  2019 - 2024

Education

• University of Southern California Ph.D. in Bioinformatics
  2019 - 2024

Projects & Funding

Projects & funding information is unavailable.

Publications (21)

• VirBinn improves viral genome binning from metagenomic Hi-C through graph diffusion
  Bioinformatics 2026 DOI: 10.1093/bioinformatics/btag271
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• MurineCyto-Det: A High-Resolution Murine BALF Cytology Dataset for Leukocyte Segmentation and Detection
  2026 DOI: 10.64898/2026.05.08.723893
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• Benchmarking computational methods for multi-omics biomarker discovery in cancer
  Briefings in Bioinformatics 2026 DOI: 10.1093/bib/bbag200
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• Metagenomic Hi‑C Protocols for Viral Genome Binning, Taxonomic Annotation, and Interaction Network Visualization
  Current Protocols 2026 DOI: 10.1002/cpz1.70341
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• mBatchNet: an interactive web server for diagnosis, correction, and benchmarking of batch effects in microbiome data
  Bioinformatics 2026 DOI: 10.1093/bioinformatics/btag538
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• Benchmarking computational methods for multi-omics biomarker discovery in cancer
  2025 DOI: 10.64898/2025.12.18.695266
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• METAHIT enables comprehensive and flexible genome-resolved microbiome analysis with metagenomic Hi-C
  2025 DOI: 10.1101/2025.10.12.681839
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• Benchmarking Alignment Strategies for Hi-C Reads in Metagenomic Hi-C Data
  2025 DOI: 10.1101/2025.07.30.667754
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• Genomic and functional characterization of a Butyricicoccus porcorum strain isolated from human gut microbiota
  mSystems 2025 DOI: 10.1128/msystems.00790-25
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• MetaHiCNet: a web server for normalizing and visualizing microbial Hi-C interaction networks
  Nucleic Acids Research 2025 DOI: 10.1093/nar/gkaf340
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