Shubham Chandak

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Publications (16)

• Genie: the first open-source ISO/IEC encoder for genomic data
  Communications Biology 2024 DOI: 10.1038/s42003-024-06249-8
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• NanoSpring: reference-free lossless compression of nanopore sequencing reads using an approximate assembly approach
  2021 DOI: 10.1101/2021.06.09.447198
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• Impact of lossy compression of nanopore raw signal data on basecalling and consensus accuracy
  Bioinformatics 2021 DOI: 10.1093/bioinformatics/btaa1017
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• Reducing latency and bandwidth for video streaming using keypoint extraction and digital puppetry
  2021
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• Impact of lossy compression of nanopore raw signal data on basecalling and consensus accuracy
  2020 DOI: 10.1101/2020.04.19.049262
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• DZip: Improved general-purpose lossless compression based on novel neural network modeling
  Data Compression Conference Proceedings 2020 DOI: 10.1109/DCC47342.2020.00065
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• LFZip: Lossy compression of multivariate floating-point time series data via improved prediction
  Data Compression Conference Proceedings 2020 DOI: 10.1109/DCC47342.2020.00042
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• Overcoming High Nanopore Basecaller Error Rates for DNA Storage via Basecaller-Decoder Integration and Convolutional Codes
  ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings 2020 DOI: 10.1109/ICASSP40776.2020.9053441
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• Overcoming High Nanopore Basecaller Error Rates for DNA Storage Via Basecaller-Decoder Integration and Convolutional Codes
  2019 DOI: 10.1101/2019.12.20.871939
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• Improved read/write cost tradeoff in DNA-based data storage using LDPC codes
  2019 DOI: 10.1101/770032
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