Lavanya Singh

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Publications (26)

• Building Pathogen Genomic Sequencing Capacity in Africa: Centre for Epidemic Response and Innovation Fellowship
  Tropical Medicine and Infectious Disease 2025 DOI: 10.3390/tropicalmed10040090
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• Viraemia and HIV drug resistance among people receiving dolutegravir versus efavirenz-based first-line antiretroviral therapy
  2023 DOI: 10.1101/2023.06.16.23291523
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• Genomic epidemiology of SARS-CoV-2 during the first four waves in Mozambique
  PLOS Global Public Health 2023 DOI: 10.1371/journal.pgph.0001593
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• Molecular Epidemiology and Diversity of SARS-CoV-2 in Ethiopia, 2020–2022
  Genes 2023 DOI: 10.3390/genes14030705
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• Molecular Epidemiology and Trends in HIV-1 Transmitted Drug Resistance in Mozambique 1999–2018
  Viruses 2022 DOI: 10.3390/v14091992
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• HIV-1 drug resistance in adults and adolescents on protease inhibitor-based antiretroviral therapy in KwaZulu-Natal Province, South Africa
  Journal of Global Antimicrobial Resistance 2022 DOI: 10.1016/j.jgar.2021.10.023
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• Targeted Sanger sequencing to recover key mutations in SARS-CoV-2 variant genome assemblies produced by next-generation sequencing
  Microbial Genomics 2022 DOI: 10.1099/mgen.0.000774
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• Persistent SARS-CoV-2 infection and intra-host evolution in association with advanced HIV infection
  medRxiv 2021 DOI: 10.1101/2021.06.03.21258228
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• Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa
  Virus Evolution 2021 DOI: 10.1093/ve/veab041
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• The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape
  medRxiv 2021 DOI: 10.1101/2021.02.23.21252268
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