Shailesh Kumar
National Institute of Plant Genome Research, University of Virginia, Bioinformatics Centre, Institute of Microbial Technology (IMTECH), Sir Ganga Ram Hospital
About
I am a scientist working at National Institute of Plant Genome Research (NIPGR), New Delhi, India.
In planta, we are exploring the generation and function of novel components (e.g., non-coding RNAs and genes) of genome regulatory circuits by using both computational and experimental approaches. For this purpose, we are using multi-omics datasets, and our choice of molecules includes Transfer RNA (tRNA)-derived non-coding RNAs (tncRNAs), ribosomal RNA-derived fragments (e.g. rRFs), long non-coding RNAs, Fusion transcripts, and novel gene family in legume crops. In addition to this, we are also developing tools and databases for plant genomics research.
Area of research: Bioinformatics, Genomics, Big data analysis, Machine Learning (ML), Deep Learning, Artificial Intelligence (AI), and Plant Biotechnology
Employment
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National Institute of Plant Genome Research Scientist2017 - Present
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University of Virginia Research Associate2015 - 2017
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Sir Ganga Ram Hospital Scientist2014 - 2015
Education
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Bioinformatics Centre, Institute of Microbial Technology (IMTECH) PhD2009 - 2014
Projects & Funding
Projects & funding information is unavailable.
Publications (81)
- PFGPred: a stack ensemble classifier for the identification of fusion genes in plants Save
- PlantXbot: an LLm-guided intelligent chatbot suite to query plant biological databases Save
- Validation of Plant Fusion Peptides Using Proteomics Data Save
- PlantXbot: An LLM-guided intelligent chatbot suite to query plant biological databases Save
- Identification of tRNA-Derived Fragments in Legumes Save
- AtFusionDB: A Comprehensive Database of Fusion Transcripts in Model Plant Arabidopsis thaliana Save
- AquaaG: A Comprehensive Pipeline for Quality Assessment and Annotation of Genomes Save
- Integrative multi-omics analysis widens annotation and functional insights into long non-coding RNAs of Arabidopsis thaliana Save
- AraNSdb: a dedicated database of stress-responsive non-coding RNAs in Arabidopsis thaliana Save
- UBA1-CDK16: A Female-Specific Chimeric RNA Emerging Through Evolution and Involved in Immune Regulation Save