Shishir K Gupta

About

Dr. Shishir K. Gupta is currently an Assistant Professor at the Centre of BioMedical Research (CBMR), Department of Data Sciences, SGPGI Campus, Lucknow, India. He holds a PhD in Bioinformatics from the University of Würzburg, Germany, and an MSc in Bioinformatics from UIET, CSJM University, Kanpur, India. He has held research positions at Heinrich Heine University, Düsseldorf, University of Würzburg, University Hospital Erlangen, and University Hospital Heidelberg. His research integrates graph theory, machine learning, and multi-omics approaches to develop diagnostic and prognostic biomarkers for complex diseases, aiming to translate these findings into clinical practice to enhance patient outcomes through personalized medicine.

Employment

• Centre of Biomedical Research Assistant Professor
  2024 - Present
• Cluster of Excellence on Plant Sciences PostDoc
  2022 - 2024
• University of Würzburg PostDoc
  2017 - 2022
• Universitätsklinikum Erlangen PostDoc
  2016 - 2017
• University of Würzburg Research Staff
  2012 - 2016
• National Center for Tumor Diseases Research Staff
  2011 - 2012
• Indian Institute of Toxicology Research Project Assistant
  2010 - 2011
• National Botanical Research Institute CSIR Project Assistant
  2008 - 2010

Education

Education history is unavailable.

Projects & Funding

Projects & funding information is unavailable.

Publications (80)

• Integrating Artificial Intelligence into metabolomics for predicting diseases
  2026 DOI: 10.1016/bs.pmbts.2026.01.010
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• A screening pipeline for human proteins interacting with dyes and toxins applied to the melanin virulence determinant 1,8-dihydroxynaphthalene of Aspergillus fumigatus
  Computers in Biology and Medicine 2026 DOI: 10.1016/j.compbiomed.2026.111624
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• Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets
  International Journal of Molecular Sciences 2025 DOI: 10.3390/ijms262110780
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• Age-dependent differential iron deficiency responses of rosette leaves during reproductive stages in Arabidopsis thaliana
  Journal of Experimental Botany 2025 DOI: 10.1093/jxb/eraf207
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• Age-dependent differential iron deficiency responses of rosette leaves during reproductive stages in Arabidopsis thaliana
  2024 DOI: 10.1101/2024.11.28.625839
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• From Proteins to Networks
  2023 DOI: 10.1201/9781003331247-20
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• Role of the Pangolin in Origin of SARS-CoV-2: An Evolutionary Perspective
  International Journal of Molecular Sciences 2022 DOI: 10.3390/ijms23169115
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• Sesquiterpenoids isolated from davana (Artemisia pallens Wall. ex DC) mitigates parkinsonism in Caenorhabditis elegans disease model
  Biochemical and Biophysical Research Communications 2022 DOI: 10.1016/j.bbrc.2022.04.005
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• Prediction and validation of host-pathogen interactions by a versatile inference approach using Aspergillus fumigatus as a case study
  Computational and Structural Biotechnology Journal 2022 DOI: 10.1016/j.csbj.2022.07.050
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• Alveolar Regeneration in COVID-19 Patients: A Network Perspective
  International Journal of Molecular Sciences 2021 DOI: 10.3390/ijms222011279
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