Ales Krenek

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Publications (52)

• Collective Variable for Metadynamics Derived from AlphaFold Output
  arXiv 2022 DOI: 10.48550/arXiv.2203.04848
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• Collective Variable for Metadynamics Derived From AlphaFold Output
  Frontiers in Molecular Biosciences 2022 DOI: 10.3389/fmolb.2022.878133
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• The EurOPDX Data Portal: an open platform for patient-derived cancer xenograft data sharing and visualization
  BMC Genomics 2022 DOI: 10.1186/s12864-022-08367-1
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• Property Map Collective Variable as a Useful Tool for a Force Field Correction
  Journal of Chemical Information and Modeling 2022 DOI: 10.1021/acs.jcim.1c00651
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• Author Correction: Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts (Nature Genetics, (2021), 53, 1, (86-99), 10.1038/s41588-020-00750-6)
  Nature Genetics 2021 DOI: 10.1038/s41588-021-00811-4
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• Complex simulation workflows in containerized high-performance environment
  35th Annual European Simulation and Modelling Conference 2021, ESM 2021 2021
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• Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts
  Nature Genetics 2021 DOI: 10.1038/s41588-020-00750-6
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• Similarity Search for an Extreme Application: Experience and Implementation
  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2021 DOI: 10.1007/978-3-030-89657-7_20
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• Exploring protein folding space with neural network guided simulations
  Modelling and Simulation 2020 - The European Simulation and Modelling Conference, ESM 2020 2020
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• Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts
  bioRxiv 2019 DOI: 10.1101/861393
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