Safee Ullah Chaudhary
Lahore University of Management Sciences
Research areas: Biochemistry, Genetics and Molecular Biology · Molecular Biology · Computational Drug Discovery Methods · Bioinformatics and Genomic Networks · Mathematical Biology Tumor Growth
0000-0002-3758-6581
About
Safee Ullah Chaudhary received his B.S. in Computer Systems Engineering from the Ghulam Ishaq Khan Institute of Engineering Sciences and Technology, Topi, Pakistan in 2002. He spent the next four years at Ultimus Inc (HQ NC) serving in the software development group. He then proceeded to South Korea for graduate studies and obtained an M.S. and Ph.D. in 2008 and 2013, respectively.
His doctoral research at the Department of Bio. & Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), was focused on computational modeling of multiscale cancer systems biology. He took an agent-based (multi-agent) approach to model tumorigenesis and uncovered the role of cell death in the Warburg Effect. This work also led to the development of the Electronic Cancer System (ELECANS), which is a next-generation modeling platform for applications in cancer systems biology.
In 2014, he joined the Department of Biology at LUMS where he established the Biomedical Informatics & Engineering Research Laboratory (BIRL) which is now involved in the development of cutting-edge techniques, software, and data analysis pipelines for applications in proteogenomics, systems biology, and eHealth towards "scientific wellness".
Employment
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Lahore University of Management Sciences Associate Professor2021 - Present
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Lahore University of Management Sciences Assistant Professor2014 - 2020
Education
Education history is unavailable.
Projects & Funding
Projects & funding information is unavailable.
Publications (36)
- The Cancer Noise Atlas (TCNA): A Webserver of Multiscale Transcriptional Noise in Cancer Save
- Age-Associated NAD+ Decline and Mitochondrial Dysfunction Predispose Cells to a Reversible Tumor-Permissive Metabolic State Save
- Conservation of the hydrogen-bond network in bacterial response regulators Save
- In-hospital Mortality Prognostication for Cancer Patients with Febrile Neutropenia: A Single Center Observational Study Save
- Causality Mapping Using Resting-state fMRI Reveals Hyperactivity and Hypoconnectivity in Schizophrenia Patients Save
- Pharmacophore-Assisted Covalent Docking Identifies a Potential Covalent Inhibitor for Drug-Resistant Genotype 3 Variants of Hepatitis C Viral NS3/4A Serine Protease Save
- NMR-Based Metabolomics: A New Paradigm to Unravel Defense-Related Metabolites in Insect-Resistant Cotton Variety through Different Multivariate Data Analysis Approaches Save
- The Solvation of the E. coli CheY Phosphorylation Site Mapped by XFMS Save
- The Solvation of the E. coli CheY Phosphorylation Site Mapped by XFMS Save
- Trends in antimicrobial resistance amongst pathogens isolated from blood and cerebrospinal fluid cultures in Pakistan (2011-2015): A retrospective cross-sectional study Save
- CRISPR-Cas13a mediated targeting of hepatitis C virus internal-ribosomal entry site (IRES) as an effective antiviral strategy Save
- A Personalized Therapeutics Approach Using an In Silico Drosophila Patient Model Reveals Optimal Chemo- and Targeted Therapy Combinations for Colorectal Cancer Save
- An evaluation of lipid profile and pro-inflammatory cytokines as determinants of cardiovascular disease in those with diabetes: a study on a Mexican American cohort Save
- Author Correction: An evaluation of lipid profile and pro-inflammatory cytokines as determinants of cardiovascular disease in those with diabetes: a study on a Mexican American cohort (Scientific Reports, (2021), 11, 1, (2435), 10.1038/s41598-021-81730-6) Save
- Expression of cyanobacterial genes enhanced CO2 assimilation and biomass production in transgenic Arabidopsis thaliana Save
- H-NMR-based metabolomics: An integrated approach for the detection of the adulteration in chicken, chevon, beef and donkey meat Save
- Host biomarkers for monitoring therapeutic response in extrapulmonary tuberculosis Save
- Navigating Multi-Scale Cancer Systems Biology Towards Model-Driven Clinical Oncology and Its Applications in Personalized Therapeutics Save
- Navigating Multi-scale Cancer Systems Biology towards Model-Driven Personalized Therapeutics Save
- PERCEPTRON: An open-source GPU-accelerated proteoform identification pipeline for top-down proteomics Save