Qianqian Song

Employment

• Purdue University West Lafayette Associate Professor
  2026 - Present
• University of Florida Assistant Professor
  2023 - 2026
• Wake Forest University School of Medicine Assistant Professor
  2021 - 2023

Education

Education history is unavailable.

Projects & Funding

Projects & funding information is unavailable.

Publications (66)

• irAEGIS: Pathway-guided interpretable prediction of immune-related adverse events
  2026 DOI: 10.64898/2026.11.01.763453
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• RESIST: an integrative resource for systematic characterization of cancer drug resistance mechanisms
  2026 DOI: 10.1093/database/baag066
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• Octave: Scale-Resolved Evaluation of Spatial Gene Expression Prediction from Histology
  2026 DOI: 10.64898/2026.09.25.754484
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• Spontaneously hypertensive rats exhibit reduced facial pain sensitivity with altered electrophysiology and transcriptomics in the trigeminal ganglia
  The Journal of Pain 2026 DOI: 10.1016/j.jpain.2026.106367
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• ShapeRNA: an integrated web server for RNA secondary structure, ensemble, and functional analysis
  Nucleic Acids Research 2026 DOI: 10.1093/nar/gkag387
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• Combining VEGFR tyrosine kinase inhibitors and PD-1/PD-L1 inhibitors versus VEGFR tyrosine kinase inhibitors monotherapy in renal cell carcinoma: a target trial emulation
  2026 DOI: 10.64898/2026.06.30.26356941
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• PHO-Agents: A Large Language Model–Powered Multi-Agent System for Predicting Health Outcomes
  2026 DOI: 10.64898/2026.06.19.26355815
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• Socioeconomic and Clinical Determinants Driving Access to BRCA Genetic Testing in Cancer : A Case-Control Study Using Observational Electronic Health Records Across Multiple Sites
  2026 DOI: 10.64898/2026.05.14.26353261
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• VIRSE: a variational Bayesian framework for RNA structural ensemble inference
  Briefings in Bioinformatics 2026 DOI: 10.1093/bib/bbag301
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• scDeepAPA: a deep learning framework for single-cell alternative polyadenylation identification
  Briefings in Bioinformatics 2026 DOI: 10.1093/bib/bbag339
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• Construction of biomimetic gradient-structured cartilage organoids and mechanistic study of their application for cartilage rejuvenation
  Bioactive Materials 2026 DOI: 10.1016/j.bioactmat.2025.12.052
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• GatorST: A Versatile Contrastive Meta‐Learning Framework for Spatial Transcriptomic Data Analysis
  Small Methods 2026 DOI: 10.1002/smtd.202600006
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• MyD88-mediated chimaeric antigen receptor macrophages suppress brain metastasis using target-specific phagocytosis
  Shih-Ying Wu, Abhishek Tyagi, Kerui Wu

  +20 more

  • Eleanor Cecile Smith
  • Qianqian Song
  • Sambad Sharma
  • Lance David Miller
  • W. Zhang
  • +15 more
  Nature Biomedical Engineering 2026 DOI: 10.1038/s41551-026-01613-x
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• SpaGene: A Deep Adversarial Framework for Spatial Gene Imputation
  Computational and Structural Biotechnology Journal 2026 DOI: 10.34133/csbj.0102
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• A hierarchical Bayesian framework for inferring mitochondrial clonal selection from single-cell data
  2026 DOI: 10.21203/rs.3.rs-8490828/v1
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• Applications of Machine Learning for Cognitive Health in Older Individuals With HIV: Rapid Systematic Review
  JMIR Aging 2025 DOI: 10.2196/80433
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• PhenoProfiler: advancing phenotypic learning for image-based drug discovery
  Nature Communications 2025 DOI: 10.1038/s41467-025-67479-w
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• scDrugMap: benchmarking large foundation models for drug response prediction
  Nature Communications 2025 DOI: 10.1038/s41467-025-67481-2
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• Integration of Genetic and Imaging Data for Alzheimer's Disease Diagnosis and Interpretation
  Advanced Science 2025 DOI: 10.1002/advs.202507629
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• Meta-sGWAS: Integrating brain spatial interactions to uncover genetic variants in Bipolar Disorder
  2025 DOI: 10.21203/rs.3.rs-5791934/v1
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