Shubham Choudhury

Employment

• Institute of Microbial Technology CSIR Project Assistant
  2019 - 2020

Education

• Indraprastha Institute of Information Technology Delhi Doctor of Philosophy
  2021 - Present
• Indian Institute of Science Education and Research Kolkata BS-MS Dual Degree
  2014 - 2019

Projects & Funding

Projects & funding information is unavailable.

Publications (25)

• Accelerating cough-based algorithms for pulmonary tuberculosis screening: Results from the CODA TB DREAM Challenge
  Open Forum Infectious Diseases 2025 DOI: 10.1093/ofid/ofaf572
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• A large language model for predicting neurotoxic peptides and neurotoxins
  Protein Science 2025 DOI: 10.1002/pro.70200
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• CPPsite3: An updated large repository of experimentally validated cell-penetrating peptides
  Drug Discovery Today 2025 DOI: 10.1016/j.drudis.2025.104421
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• A large language model for predicting pancreatic ductal adenocarcinoma patients from blood-derived exosomal transcriptomics data
  2025 DOI: 10.1101/2025.03.06.641795
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• NTxPred2: A large language model for predicting neurotoxic peptides and neurotoxins
  2025 DOI: 10.1101/2025.03.01.640936
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• Prediction of Plant Resistance Proteins Using Alignment‐Based and Alignment‐Free Approaches
  PROTEOMICS 2025 DOI: 10.1002/pmic.202400261
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• Prediction of hemolytic peptides and their hemolytic concentration
  Communications Biology 2025 DOI: 10.1038/s42003-025-07615-w
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• Prediction of Anti‐Freezing Proteins From Their Evolutionary Profile
  PROTEOMICS 2025 DOI: 10.1002/pmic.202400157
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• Prediction of lncRNA-protein interacting pairs using LLM embeddings based on evolutionary information
  2025 DOI: 10.1101/2025.11.10.687101
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• Compilation of resources on subcellular localization of lncRNA
  Frontiers in RNA Research 2024 DOI: 10.3389/frnar.2024.1419979
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