Alexander Dilthey

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Publications (33)

• Long‐term intraanal HPV16 infection in men having sex with men with HIV: Persistence or reinfection?
  Journal of the European Academy of Dermatology and Venereology 2026 DOI: 10.1111/jdv.70380
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• KIR*BLOOM: Accurate KIR genotyping using a new copy number-aware integrated genotype likelihood framework
  2026 DOI: 10.64898/2026.04.15.718735
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• Dynamic prediction of mortality risk following allogeneic hematopoietic stem cell transplantation
  Machine Learning: Health 2025 DOI: 10.1088/3049-477X/adf74e
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• Response: Use of integrated genomic surveillance by local public health authorities: Recommendations based on a mixed-methods study of current adoption, applications and success factors, Germany, 2023
  Eurosurveillance 2025 DOI: 10.2807/1560-7917.ES.2025.30.28.2500508
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• Dynamic Prediction of Mortality Risk Following Allogeneic Hematopoietic Stem Cell Transplantation
  2025 DOI: 10.1101/2025.02.17.25322391
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• NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data
  mSystems 2024 DOI: 10.1128/msystems.01080-24
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• Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet
  2024 DOI: 10.1101/2024.06.01.596961
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• SWGTS—a platform for stream-based host DNA depletion
  Bioinformatics 2024 DOI: 10.1093/bioinformatics/btae332
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• Insights into gut microbiomes in stem cell transplantation by comprehensive shotgun long-read sequencing
  Scientific Reports 2024 DOI: 10.1038/s41598-024-53506-1
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• HOGVAX: Exploiting epitope overlaps to maximize population coverage in vaccine design with application to SARS-CoV-2
  Cell Systems 2023 DOI: 10.1016/j.cels.2023.11.001
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• MetaGut: Insights into gut microbiomes in stem cell transplantation by comprehensive shotgun long-read sequencing
  2023 DOI: 10.1101/2023.03.10.531901
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• HOGVAX: Exploiting Peptide Overlaps to Maximize Population Coverage in Vaccine Design with Application to SARS-CoV-2
  2023 DOI: 10.1101/2023.01.09.523288
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• High-resolution African HLA resource uncoversHLA-DRB1expression effects underlying vaccine response
  2022 DOI: 10.1101/2022.11.24.22282715
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• RNA transcription and degradation of Alu retrotransposons depends on sequence features and evolutionary history
  G3 Genes|Genomes|Genetics 2022 DOI: 10.1093/g3journal/jkac054
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• Haploflow: Strain-resolvedde novoassembly of viral genomes
  2021 DOI: 10.1101/2021.01.25.428049
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• Pangenome-based genome inference
  2020 DOI: 10.1101/2020.11.11.378133
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• Distinct genetic architectures and environmental factors associate with host response to the γ2-herpesvirus infections
  Nature Communications 2020 DOI: 10.1038/s41467-020-17696-2
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• Pervasive additive and non-additive effects within the HLA region contribute to disease risk in the UK Biobank
  2020 DOI: 10.1101/2020.05.28.119669
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• HLA*LA—HLA typing from linearly projected graph alignments
  Bioinformatics 2019 DOI: 10.1093/bioinformatics/btz235
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• Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
  Nature Communications 2019 DOI: 10.1038/s41467-019-10934-2
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