Kyle Ellrott

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Publications (69)

• Towards a decentralized future for open-science databases
  Nature Genetics 2026 DOI: 10.1038/s41588-026-02606-x
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• Ten Quick Tips for Biomedical Federated Learning
  2026 DOI: 10.20944/preprints202601.2048.v1
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• Pooling multimodal cancer data across unaligned embedding spaces maintains tumor of origin signal
  Bioinformatics Advances 2026 DOI: 10.1093/bioadv/vbag159
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• Eleven quick tips for Biomedical Federated Learning
  PLOS Computational Biology 2026 DOI: 10.1371/journal.pcbi.1014530
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• FHIR as a Unifying Format for Genomic Research Data Tracking, Aggregation, and Integration
  2025 DOI: 10.64898/2025.12.22.695544
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• Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles.
  Scientific reports 2025 DOI: 10.1038/s41598-025-09075-y
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• Aggregating multimodal cancer data across unaligned embedding spaces maintains tumor of origin signal
  2025 DOI: 10.1101/2025.05.14.653900
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• Protocol for obtaining cancer type and subtype predictions using subSCOPE.
  STAR protocols 2025 DOI: 10.1016/j.xpro.2025.103705
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• Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods.
  STAR protocols 2025 DOI: 10.1016/j.xpro.2025.103681
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• Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets.
  Cancer cell 2025 DOI: 10.1016/j.ccell.2024.12.002
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