Carles Hernandez-Ferrer

Employment

• Barcelona Supercomputing Center Team Lead

Education

• Universitat Pompeu Fabra PhD Biomedicine
  2013 - 2017
• Universitat Autònoma de Barcelona Master in Bioinformatics
  2012 - 2013
• Universitat Autònoma de Barcelona Llicenciatura Superior en Informàtica
  2005 - 2012

Projects & Funding

Projects & funding information is unavailable.

Publications (45)

• Federated learning frameworks: quality and interoperability for biomedical research
  NAR Genomics and Bioinformatics 2026 DOI: 10.1093/nargab/lqag010
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• Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
  Nature methods 2024 DOI: 10.1038/s41592-024-02298-3
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• Epimutation detection in the clinical context: guidelines and a use case from a new Bioconductor package.
  Epigenetics 2023 DOI: 10.1080/15592294.2023.2230670
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• Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
  2023 DOI: 10.1101/2023.07.25.550582
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• Patterns of Heterochromatin Transitions Linked to Changes in the Expression of Plasmodium falciparum Clonally Variant Genes.
  Microbiology spectrum 2022 DOI: 10.1128/spectrum.03049-22
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• Multi-omics signatures of the human early life exposome
  Nature Communications 2022 DOI: 10.1038/s41467-022-34422-2
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• The RD-Connect Genome-Phenome Analysis Platform: Accelerating diagnosis, research, and gene discovery for rare diseases.
  Human mutation 2022 DOI: 10.1002/humu.24353
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• Identification of autosomal cis expression quantitative trait methylation (cis eQTMs) in children's blood.
  eLife 2022 DOI: 10.7554/elife.65310
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• Solving patients with rare diseases through programmatic reanalysis of genome-phenome data
  Leslie Matalonga, Carles Hernandéz-Ferrer, Davide Piscia +97 more
  European Journal of Human Genetics 2021 DOI: 10.1038/s41431-021-00852-7
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• Variability of multi-omics profiles in a population-based child cohort.
  BMC medicine 2021 DOI: 10.1186/s12916-021-02027-z
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• Solve-RD: systematic pan-European data sharing and collaborative analysis to solve rare diseases
  Birte Zurek, Kornelia Ellwanger, Lisenka E.L.M. Vissers +97 more
  European Journal of Human Genetics 2021 DOI: 10.1038/s41431-021-00859-0
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• The early-life exposome and epigenetic age acceleration in children.
  Environment international 2021 DOI: 10.1016/j.envint.2021.106683
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• Multi-omics signatures of the human early life exposome
  2021 DOI: 10.1101/2021.05.04.21256605
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• Early life multiple exposures and child cognitive function: A multi-centric birth cohort study in six European countries.
  Environmental pollution (Barking, Essex : 1987) 2021 DOI: 10.1016/j.envpol.2021.117404
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• WEScover: selection between clinical whole exome sequencing and gene panel testing.
  BMC bioinformatics 2021 DOI: 10.1186/s12859-021-04178-5
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• Correction to: A guide to writing systematic reviews of rare disease treatments to generate FAIRcompliant datasets: building a Treatabolome.
  Orphanet journal of rare diseases 2021 DOI: 10.1186/s13023-021-01777-6
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• Early-life environmental exposure determinants of child behavior in Europe: A longitudinal, population-based study.
  Environment international 2021 DOI: 10.1016/j.envint.2021.106523
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• Solving patients with rare diseases through programmatic reanalysis of genome-phenome data (Jun, 10.1038/s41431-021-00852-7, 2021)
  Leslie Matalonga, Carles Hernandéz-Ferrer, Davide Piscia +97 more
  European Journal of Human Genetics 2021 DOI: 10.1038/S41431-021-00934-6
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• The Treatabolome flags treatable genes and variants: an emerging concept
  Neuromuscular Disorders 2021 DOI: 10.1016/J.NMD.2021.07.344
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• Identification of autosomal cis expression quantitative trait methylation (cis eQTMs) in children’s blood
  2020 DOI: 10.1101/2020.11.05.368076
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