Shabarni Gupta

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Publications (24)

• scShapeBench: Discovering geometry from high dimensional scRNAseq data
  Arxiv 2026 DOI: 10.48550/arXiv.2605.12662
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• AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
  Cancer Discovery 2025 DOI: 10.1158/2159-8290.CD-24-0684
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• Data from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
  2025 DOI: 10.1158/2159-8290.c.8072557
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• Figures S1-9 from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
  2025 DOI: 10.1158/2159-8290.30284386
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• Supplementary Table 1 from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
  2025 DOI: 10.1158/2159-8290.30284383
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• Supplementary Table 2 from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
  2025 DOI: 10.1158/2159-8290.30284380
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• Revealing dynamic temporal regulatory networks driving cancer cell state plasticity with neural ODE-based optimal transport
  Research Square 2023 DOI: 10.21203/rs.3.rs-3605296/v1
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• Revealing dynamic temporal trajectories and underlying regulatory networks with Cflows
  Biorxiv 2023 DOI: 10.1101/2023.03.28.534644
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• Temporal Profile of Kynurenine Pathway Metabolites in a Rodent Model of Autosomal Recessive Polycystic Kidney Disease.
  International journal of tryptophan research : IJTR 2022 DOI: 10.1177/11786469221126063
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• Nephronophthisis-Pathobiology and Molecular Pathogenesis of a Rare Kidney Genetic Disease.
  Genes 2021 DOI: 10.3390/genes12111762
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• Profiling Autoantibody Responses to Devise Novel Diagnostic and Prognostic Markers Using High-Density Protein Microarrays.
  Shabarni Gupta, Arghya Banerjee, Parvez Syed

  +1 more

  • Sanjeeva Srivastava
  Methods in molecular biology (Clifton, N.J.) 2021 DOI: 10.1007/978-1-0716-1562-1_14
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• Evaluation of autoantibody signatures in meningioma patients using human proteome arrays.
  Shabarni Gupta, Shuvolina Mukherjee, Parvez Syed

  +9 more

  • Narendra Goud Pandala
  • Saket Choudhary
  • Vedita Anand Singh
  • Namrata Singh
  • Heng Zhu
  • +4 more
  Oncotarget 2017 DOI: 10.18632/oncotarget.16997
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• Serum Profiling for Identification of Autoantibody Signatures in Diseases Using Protein Microarrays.
  Shabarni Gupta, Manubhai KP, Shuvolina Mukherjee

  +1 more

  • Sanjeeva Srivastava
  Methods in molecular biology (Clifton, N.J.) 2017 DOI: 10.1007/978-1-4939-7057-5_21
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• Protein microarray applications: Autoantibody detection and posttranslational modification.
  Apurva Atak, Shuvolina Mukherjee, Rekha Jain

  +5 more

  • Shabarni Gupta
  • Vedita Anand Singh
  • Nikita Gahoi
  • Manubhai KP
  • Sanjeeva Srivastava
  Proteomics 2016 DOI: 10.1002/pmic.201600104
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• An overview of innovations and industrial solutions in Protein Microarray Technology.
  Proteomics 2016 DOI: 10.1002/pmic.201500429
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• Targeted Proteomics Workshop and International Symposium (IIT Bombay, Mumbai, India): An Accelerator for Global Proteomics.
  Omics : a journal of integrative biology 2016 DOI: 10.1089/omi.2016.0037
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• Exigencies of biomarker research in the developing world: A focus on the dearth of biobanking resources
  Biomarker Discovery in the Developing World: Dissecting the Pipeline for Meeting the Challenges 2016 DOI: 10.1007/978-81-322-2837-0_1
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• Geographic pervasiveness of cancer: Prospects of novel biomarker and therapeutic research in developing countries using OMICS approaches
  Biomarker Discovery in the Developing World: Dissecting the Pipeline for Meeting the Challenges 2016 DOI: 10.1007/978-81-322-2837-0_2
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• Omics: Data processing and analysis
  Saicharan Ghantasala, Shabarni Gupta, Vimala Ashok Mani

  +4 more

  • Vineeta Rai
  • Tumpa Raj Das
  • Panga Jaipal Reddy
  • Veenita Grover Shah
  Biomarker Discovery in the Developing World: Dissecting the Pipeline for Meeting the Challenges 2016 DOI: 10.1007/978-81-322-2837-0_3
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• Regulatory norms and intellectual property rights for biomarker research
  Biomarker Discovery in the Developing World: Dissecting the Pipeline for Meeting the Challenges 2016 DOI: 10.1007/978-81-322-2837-0_8
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