Xiaohui Wu

About

Dr. Xiaohui Wu received her bachelor degree and PhD degree in Automation from Xiamen University in 2006 and 2011, respectively. She is currently a Professor with Pasteurien College of Soochow University. Her research centers around bioinformatics.

Experience
2021/07 - Present Professor, Soochow University
2015/08 - 2021/06 Associate Professor, Xiamen University
2011/09 - 2015/07 Assistant Professor, Xiamen University
2016/08 - 2017/08 Guest Scientist, University of Cologne
2009/10 - 2010/10 Guest Student, Miami University

Research Interests
(1) Single-cell sequencing data analysis
(2) Machine learning for big data analysis
(3) Omics data mining in RNA processing and gene expression regulation
(4) Construction of database or websites related to biomedical data

Employment

• Soochow University Professor
  2021 - Present
• Xiamen University Associate professor
  2011 - 2021

Education

• Xiamen University PhD
  2008 - 2011

Projects & Funding

Projects & funding information is unavailable.

Publications (78)

• Single-Cell Gene Module Inference Reveals Alternative Polyadenylation Dynamics Associated with Autism
  International Journal of Molecular Sciences 2026 DOI: 10.3390/ijms27062849
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• PolyAseqTrap: a universal tool for genome-wide identification and quantification of polyadenylation sites from different 3′ end sequencing data
  Genome Biology 2026 DOI: 10.1186/s13059-026-03963-w
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• Benchmarking computational methods for identifying and quantifying polyadenylation sites from 3′ tag-based single-cell RNA-seq data
  Nucleic Acids Research 2026 DOI: 10.1093/nar/gkag490
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• Multimodal Fusion of Gene Expression and Alternative Polyadenylation Profiles for Spatial Clustering
  2025 DOI: 10.1145/3774976.3774990
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• Benchmarking computational methods for detecting spatial domains and domain-specific spatially variable genes from spatial transcriptomics data
  Nucleic Acids Research 2025 DOI: 10.1093/nar/gkaf303
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• Disc-Hub: a python package for benchmarking machine learning strategies in DIA-MS identification
  Bioinformatics Advances 2024 DOI: 10.1093/bioadv/vbaf232
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• Supervised analysis of alternative polyadenylation from single-cell and spatial transcriptomics data with spvAPA
  Briefings in Bioinformatics 2024 DOI: 10.1093/bib/bbae720
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• Benchmarking Algorithms for Gene Set Scoring of Single-cell ATAC-seq Data
  Genomics, Proteomics & Bioinformatics 2024 DOI: 10.1093/gpbjnl/qzae014
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• Calib-RT: an open source python package for peptide retention time calibration in DIA mass spectrometry data
  Bioinformatics 2024 DOI: 10.1093/bioinformatics/btae417
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• vizAPA: visualizing dynamics of alternative polyadenylation from bulk and single-cell data
  Bioinformatics 2024 DOI: 10.1093/bioinformatics/btae099
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