karunesh arora

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Publications (19)

• Exploring the Functional Landscape of Biomolecular Machines via Elastic Network Normal Mode Analysis
  2011
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• Conformational dynamics in human purine nucleoside phosphorylase with reactants and transition-state analogues
  Journal of Physical Chemistry B 2010
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• Hexameric helicase deconstructed: interplay of conformational changes and substrate coupling
  Biophysical Journal 2010
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• Extracting kinetic and stationary distribution information from short MD trajectories via a collection of surrogate diffusion models
  Journal of Chemical Theory and Computation 2009
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• Functionally important conformations of the met20 loop in dihydrofolate reductase are populated by rapid thermal fluctuations
  Journal of the American Chemical Society 2009
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• K+/Na+ selectivity in toy cation binding site models is determined by the 'host'
  Biophysical Journal 2009
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• Mismatched Base-Pair Simulations for ASFV Pol X/DNA Complexes Help Interpret Frequent G•G Misincorporation
  Journal of Molecular Biology 2008
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• Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism
  Proceedings of the National Academy of Sciences of the United States of America 2007
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• In silico studies of the African swine fever virus DNA polymerase X support an induced-fit mechanism
  Biophysical Journal 2006
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• Subtle but variable conformational rearrangements in the replication cycle of Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4) may accommodate lesion bypass
  Protein Science 2006
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