Ankit Agrawal

Employment

• Bristol-Myers Squibb (India) IPS
  2026 - Present
• Catalym GmbH Senior Scientisit
  2025 - 2026
• University of Würzburg computational postdoc
  2021 - 2025
• Max Planck Institute of Immunobiology and Epigenetics computational postdoc in single cell biology
  2021 - 2021
• Weizmann Institute of Science computational postdoc in bone tissue morphogenesis
  2018 - 2020

Education

• Institute of Mathematical Sciences PhD
  2013 - 2018

Projects & Funding

Projects & funding information is unavailable.

Publications (21)

• Redefining Pathobiology with Spatial Multi-Omics at the Intersection of Biology, Computation, and Histopathological Assessment
  The American Journal of Pathology 2026 DOI: 10.1016/j.ajpath.2026.01.007
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• An immunobiliary single-cell atlas resolves crosstalk between type 2 conventional dendritic cells and γδ T cells in cholangitis
  Nature Communications 2026 DOI: 10.1038/s41467-026-71537-2
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• Spatiotemporal dynamics of the cardioimmune niche during lesion repair
  Nature Cardiovascular Research 2025 DOI: 10.1038/s44161-025-00739-6
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• Decoding cell–cell communication using spatial transcriptomics
  Nature Reviews Genetics 2025 DOI: 10.1038/s41576-025-00824-3
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• NiCo identifies extrinsic drivers of cell state modulation by niche covariation analysis
  Ankit Agrawal, Stefan Thomann, Sukanya Basu +1 more
  Nature Communications 2024 DOI: 10.1038/s41467-024-54973-w
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• Spatio-temporal dynamics of the fibrotic niche in cardiac repair
  2024 DOI: 10.1101/2024.11.10.622609
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• Tracking Bone Marrow Regeneration after CAR-T Cell Therapy in Myeloma at Spatial Single-Cell Resolution Reveals Determinants of Prolonged Cytopenia
  Blood 2024 DOI: 10.1182/blood-2024-203052
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• Limited column formation in the embryonic growth plate implies divergent growth mechanisms during pre- and postnatal bone development
  eLife 2024 DOI: 10.7554/eLife.95289
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• NiCo Identifies Extrinsic Drivers of Cell State Modulation by Niche Covariation Analysis
  2024 DOI: 10.1101/2024.09.08.611848
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• OS-043 Site-specific maturation dynamics of type 2 conventional dendritic cells connect with gamma delta T17 effector differentiation in cholestatic liver disease
  Journal of Hepatology 2024 DOI: 10.1016/s0168-8278(24)00484-7
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• Bone elongation in the embryo occurs without column formation in the growth plate
  bioRxiv 2023 DOI: 10.1101/2023.11.14.567062
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• Application of 3D MAPs pipeline identifies the morphological sequence chondrocytes undergo and the regulatory role of GDF5 in this process
  Nature Communications 2021 DOI: 10.1038/s41467-021-25714-0
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• 3D MAPs discovers the morphological sequence chondrocytes undergo in the growth plate and the regulatory role of GDF5 in this process
  bioRxiv 2020 DOI: 10.1101/2020.07.28.225409
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• Nonequilibrium Biophysical Processes Influence the Large-Scale Architecture of the Cell Nucleus
  Ankit Agrawal, Nirmalendu Ganai, Surajit Sengupta +1 more
  Biophysical Journal 2020 DOI: 10.1016/j.bpj.2019.11.017
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• THiCweed: Fast, sensitive detection of sequence features by clustering big datasets
  Nucleic Acids Research 2019 DOI: 10.1093/nar/gkx1251
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• A First-principles Approach to Large-scale Nuclear Architecture
  Biophysical Journal 2018
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• A first-principles approach to large-scale nuclear architecture
  bioRxiv 2018 DOI: 10.1101/315812
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• Chromatin as active matter
  Journal of Statistical Mechanics: Theory and Experiment 2017 DOI: 10.1088/1742-5468/aa5287
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• THiCweed: Fast, sensitive detection of sequence features by clustering big data sets
  bioRxiv 2017 DOI: 10.1101/104109
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• The inconvenience of data of convenience: Computational research beyond post-mortem analyses
  Chloé‐Agathe Azencott, Tero A. Aittokallio, Sushmita Roy +4 more
  Nature Methods 2017 DOI: 10.1038/nmeth.4457
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