Rolf Sommer Kaas

Employment

• Technical University of Denmark

Education

Education history is unavailable.

Projects & Funding

Projects & funding information is unavailable.

Publications (51)

• PanRes: a database of latent and acquired antimicrobial resistance allowing 3D-based protein homology search
  Bioinformatics 2026 DOI: 10.1093/bioinformatics/btag776
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• PanRes: A database of latent and acquired antimicrobial resistance allowing 3D-based protein homology search
  2026 DOI: 10.64898/2026.06.22.733705
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• Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2
  Alfred Ferrer Florensa, José Juan Almagro Armenteros, Rolf Sommer Kaas +4 more
  Bioinformatics 2026 DOI: 10.1093/bioinformatics/btag129
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• Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models, with PathogenFinder2
  2025 DOI: 10.1101/2025.04.12.648497
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• ListPred: A predictive ML tool for virulence potential and disinfectant tolerance in Listeria monocytogenes
  Infection, Genetics and Evolution 2025 DOI: 10.1016/j.meegid.2025.105739
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• Multi-country and intersectoral assessment of cluster congruence between pipelines for genomics surveillance of foodborne pathogens
  Nature Communications 2025 DOI: 10.1038/s41467-025-59246-8
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• Analysis of genetic signatures of virulence and resistance in foodborne Staphylococcus aureus isolates from Algeria
  LWT 2024 DOI: 10.1016/j.lwt.2024.116754
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• ListPred: A predictive ML tool for virulence potential and disinfectant tolerance inListeria monocytogenes
  2024 DOI: 10.1101/2024.01.29.577690
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• Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering
  Communications Biology 2023 DOI: 10.1038/s42003-023-05083-8
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• Exploring the Inhibitory Activity of Selected Lactic Acid Bacteria against Bread Rope Spoilage Agents
  Fermentation 2023 DOI: 10.3390/fermentation9030290
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• Trends in Salmonella Dublin over time in Denmark from food and animal related isolates
  Infection, Genetics and Evolution 2023 DOI: 10.1016/j.meegid.2023.105475
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• Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering
  2022 DOI: 10.21203/rs.3.rs-1321305/v1
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• ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
  Microbial Genomics 2022 DOI: 10.1099/mgen.0.000748
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• Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns
  Microbiology Spectrum 2021 DOI: 10.1128/Spectrum.01387-21
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• ResFinder 4.0 for predictions of phenotypes from genotypes
  Journal of Antimicrobial Chemotherapy 2020 DOI: 10.1093/jac/dkaa345
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• Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods
  Scientific Data 2020 DOI: 10.1038/s41597-020-0417-7
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• Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance
  Frontiers in Public Health 2020 DOI: 10.3389/fpubh.2020.00038
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• Worldwide human mitochondrial haplogroup distribution from urban sewage
  Scientific Reports 2019 DOI: 10.1038/s41598-019-48093-5
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• Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
  René S. Hendriksen, Patrick Munk, Patrick Murigu Kamau Njage +97 more
  Nature Communications 2019 DOI: 10.1038/s41467-019-08853-3
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• The COMPARE Data Hubs
  Database : the journal of biological databases and curation 2019 DOI: 10.1093/database/baz136
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