Alfred Ferrer Florensa

Employment

• Technical University of Denmark PhD
  2022 - 2025
• Technical University of Denmark

Education

Education history is unavailable.

Projects & Funding

Projects & funding information is unavailable.

Publications (9)

• Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2
  Alfred Ferrer Florensa, José Juan Almagro Armenteros, Rolf Sommer Kaas +4 more
  Bioinformatics 2026 DOI: 10.1093/bioinformatics/btag129
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• PathogenFinder2 Data
  2025 DOI: 10.6084/m9.figshare.28779440
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• PathogenFinder2 Source Code
  2025 DOI: 10.6084/m9.figshare.29413277
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• Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models, with PathogenFinder2
  2025 DOI: 10.1101/2025.04.12.648497
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• Modeling of biological sequences for prediction and characterization of pathogenicity using deep learning
  2025
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• SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects
  Alfred Ferrer Florensa, José Juan Almagro Armenteros, Henrik Nielsen +2 more
  NAR Genomics and Bioinformatics 2024 DOI: 10.1093/nargab/lqae106
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• ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
  Microbial Genomics 2022 DOI: 10.1099/mgen.0.000748
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• Automated download and clean-up of family specific databases for kmer-based virus identification
  Bioinformatics 2021 DOI: 10.1093/bioinformatics/btaa857
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• ResFinder 4.0 for predictions of phenotypes from genotypes
  Journal of Antimicrobial Chemotherapy 2020 DOI: 10.1093/jac/dkaa345
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