Ali Kishk

Employment

• University of Luxembourg PhD Student
  2020 - 2024
• Nile University Bioinformatics Research Assistant
  2017 - 2019
• H3ABioNet, NIH Bioinformatics Researcher
  2016 - 2017

Education

• Nile University Master of Science in Information & Communication: Informatics
  2017 - 2019
• Mansoura University Faculty of Pharmacy Bachelor in Pharmaceutical Sciences
  2009 - 2014

Projects & Funding

Projects & funding information is unavailable.

Publications (16)

• AMBRA1 levels predict resistance to MAPK inhibitors in melanoma
  Luca Di Leo, Chiara Pagliuca, Ali Kishk +18 more
  Proceedings of the National Academy of Sciences of the United States of America 2024 DOI: 10.1073/pnas.2400566121
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• Metabolic models predict fotemustine and the combination of eflornithine/rifamycin and adapalene/cannabidiol for the treatment of gliomas
  Briefings in Bioinformatics 2024 DOI: 10.1093/bib/bbae199
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• Metabolic modelling-based in silico drug target prediction identifies six novel repurposable drugs for melanoma
  Cell Death & Disease 2023 DOI: 10.1038/s41419-023-05955-1
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• Bruceine D Identified as a Drug Candidate against Breast Cancer by a Novel Drug Selection Pipeline and Cell Viability Assay
  Pharmaceuticals 2022 DOI: 10.3390/ph15020179
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• Drug Target Prediction Using Context-Specific Metabolic Models Reconstructed from rFASTCORMICS
  Methods in Molecular Biology 2022 DOI: 10.1007/978-1-0716-2513-2_17
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• Integrative analysis of host omics and microbiome data provides hints at common pathways and biomarkers for diabetes risk
  Research Square 2022 DOI: 10.21203/rs.3.rs-2035236/v1
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• Project-based learning course on metabolic network modelling in computational systems biology
  PLoS Computational Biology 2022 DOI: 10.1371/journal.pcbi.1009711
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• Review of Current Human Genome-Scale Metabolic Models for Brain Cancer and Neurodegenerative Diseases
  Cells 2022 DOI: 10.3390/cells11162486
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• DCcov: Repositioning of drugs and drug combinations for SARS-CoV-2 infected lung through constraint-based modeling
  iScience 2021 DOI: 10.1016/j.isci.2021.103331
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• The H3ABioNet helpdesk: an online bioinformatics resource, enhancing Africa’s capacity for genomics research
  BMC Bioinformatics 2019 DOI: 10.1186/s12859-019-3322-3
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• AmpliconNet: Sequence Based Multi-layer Perceptron for Amplicon Read Classification Using Real-time Data Augmentation
  Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018 2019 DOI: 10.1109/BIBM.2018.8621287
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• Beta2-adrenergic receptor variants in children and adolescents with bronchial asthma
  Frontiers in Bioscience Elite 2019 DOI: 10.2741/E846
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• MetaFlow: An interactive user-friendly workflow for automated analysis of whole genome shotgun sequencing metagenomic data
  Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018 2019 DOI: 10.1109/BIBM.2018.8621171
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• A Hybrid Machine Learning Approach for the Phenotypic Classification of Metagenomic Colon Cancer Reads Based on Kmer Frequency and Biomarker Profiling
  2018 9th Cairo International Biomedical Engineering Conference, CIBEC 2018 - Proceedings 2018 DOI: 10.1109/CIBEC.2018.8641805
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• Hackathons as a means of accelerating scientific discoveries and knowledge transfer
  Genome Research 2018 DOI: 10.1101/gr.228460.117
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• SpeciesMLP: Sequence based Multi-layer Perceptron For Amplicon Read Classification Using Real-time Data Augmentation
  bioRxiv 2018 DOI: 10.1101/419846
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